PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g017530.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 309aa    MW: 34838.2 Da    PI: 4.7232
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g017530.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.2e-10130173755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + Er+RR r+++++  Lr+l+P+      +K++Ka+i   A+ Y++ Lq
  Sopen06g017530.1 130 ISERKRRGRMKEKLYALRSLVPNI-----TKMDKASIIGDAILYVQGLQ 173
                       67*********************7.....7*****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-15122191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.869123172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.82E-11125175No hitNo description
Gene3DG3DSA:4.10.280.101.7E-15125192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-13129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7130173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0034756Biological Processregulation of iron ion transport
GO:0071281Biological Processcellular response to iron ion
GO:0071369Biological Processcellular response to ethylene stimulus
GO:0071732Biological Processcellular response to nitric oxide
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MESGNASTEN NNVNDIGLIN FLDEDNFEQF IELIRGETAD PIVKFCPNYD CEHMTGCFSA  60
ANAQFEPILS SMDFYDTTLP DPISLYNCEI KLDNNDDDDD DDDGSSGTTA TTKMTPTSKG  120
TRTDRSRTLI SERKRRGRMK EKLYALRSLV PNITKMDKAS IIGDAILYVQ GLQTKAKKLK  180
VEIAEFESSI NQSGIFQNAK KMNFTTYYPA IKRITKMDIN QVEEKGFYVR LICNKGRHIA  240
ASLFKALESL NGFNVQTSNL ATSTNDYIFT FTLNVRECHE VDINFGNLKL WIASAFLNQG  300
FDFETSPLV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4378780.0AF437878.1 Lycopersicon esculentum bHLH transcriptional regulator (fer) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078690.10.0PREDICTED: transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
SwissprotQ0V7X42e-85FIT_ARATH; Transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLQ5GA670.0Q5GA67_SOLLC; BHLH transcriptional regulator
STRINGSolyc06g051550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37822340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.13e-78FER-like regulator of iron uptake